PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G084500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 495aa    MW: 53964.8 Da    PI: 8.2607
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G084500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17158207155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Potri.016G084500.1 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207
                         78*******************......55************************997 PP

2AP2422.3e-13250300155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Potri.016G084500.1 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 300
                         89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.49E-16158217IPR016177DNA-binding domain
PfamPF008475.7E-9158207IPR001471AP2/ERF domain
CDDcd000181.12E-11159217No hitNo description
SMARTSM003805.3E-33159221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-17159216IPR001471AP2/ERF domain
PROSITE profilePS5103217.794159215IPR001471AP2/ERF domain
PfamPF008475.4E-9250300IPR001471AP2/ERF domain
CDDcd000181.59E-25250310No hitNo description
SuperFamilySSF541711.31E-16250309IPR016177DNA-binding domain
SMARTSM003801.7E-31251314IPR001471AP2/ERF domain
PROSITE profilePS5103215.514251308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15251308IPR001471AP2/ERF domain
PRINTSPR003675.4E-6252263IPR001471AP2/ERF domain
PRINTSPR003675.4E-6290310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MMLDLNLTAG SGDSSTTAKN NNKMKILELS NSPMESSGSF NSSSVVNADG CGDEDSCSNG  60
DVFALNFSIL SNESSSKKTV YSNTNDHDDR GDRTIQLFPV ECGPKNVGGE SNSSSTVQMQ  120
PVDLGGSRNY GGPPEQGIGA RQQKPVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNVSDYD EDIKQMSGFT KEEFVHTLRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEIEAARA YDKAAIKCNG  300
REAVTNFEPS KYEGEILSEP SSGDGNQNLD LKLGIAPPDA SDSLKVNSNM GGFYFHGGWD  360
GVSTDRAPKF LNSVSATMKN QLPNGPGVTS VHPPMWDGIN HRIFPIYEER AIEKRMEVDS  420
FPNWTRQIQG PYGGGANPLP LFSTAASSGF ASSAIMAPSA AAGQLHYPSS TILHHRFSPP  480
ITNPSNISQF YCRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322849.10.0hypothetical protein POPTR_0016s08530g
TrEMBLB9IIZ00.0B9IIZ0_POPTR; Uncharacterized protein
STRINGPOPTR_0016s08530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-100related to AP2.7